As a leader or co-leader
- “MONADI” (4 CDs Set) – Stefano Maltese & Antonio Moncada – Labirinti Sonori, 2017
- “SÌKKURAT” – Stefano Maltese’s Sonic Maze – Labirinti Sonori, 2015
- “MEN FROM WINDY LAND” – Stefano Maltese & John Tchicai – Labirinti Sonori, 2015
- “A WINGING FLOCK” – Sikelé Orkestra, Conductor: Stefano Maltese – Labirinti Sonori, 2014
- “A WORLD APART” – Stefano Maltese Open Sound Ensemble – Labirinti Sonori, 2012
- “INSIDE THE FLOW” – Gioconda Cilio, Stefano Maltese, Antonio Moncada – Guest: Evan Parker – Labirinti Sonori, 2011
- “THE SPIRITUAL MAN” – Open Orchestra featuring John Tchicai – Terre Sommerse, 2009
- “THIS FLOATING SPACE SUITE” – Stefano Maltese As Sikilli – Rai Trade, Tracce, 2009
- “THE LION IS DREAMING” – Stefano Maltese Featuring Keith Tippett – Labirinti Sonori, 2008
- “ALL IS ALWAYS NOW” – Stefano Maltese AKA Quintet – Labirinti Sonori, 2008
- “MONK KNOW” – Know Quartet – Labirinti Sonori, 2006
- “‘DJA ‘BA ‘LA” – Stefano Maltese Ghost Company – Labirinti Sonori, 2006
- “SONGS WITH STRINGS” – Gioconda Cilio & Stefano Maltese – Labirinti Sonori, 2006
- “HAMADA SUITE” – Stefano Maltese As Sikilli – DDQ, 2003
- “BLUE” – Marilyn Crispell & Stefano Maltese Guest: Gioconda Cilio – Black Saint, 2001
- “RED” – Marilyn Crispell & Stefano Maltese – Black Saint, 2000
- “LIVING ALIVE” – Stefano Maltese Open Sound Ensemble – Leo Records, 1999
- “OPEN LETTER TO MINGUS” – Stefano Maltese Open Music Orchestra – Musica Jazz, 1999
- “GOOD MORNING MIDNIGHT” – Stefano Maltese – Splasc(h), 1998
- “SEVEN TRACKS FOR TOMORROW” – Stefano Maltese As Sikilli Ensemble – DDQ, 1997
- “DOUBLE MIRROR” – Stefano Maltese, Evan Parker, Keith Tippett, Antonio Moncada – Splasc(h), 1996
- “VOICES IN THE WIND” – Stefano Maltese As Sikilli Ensemble – DDQ, 1995
- “BOOK OF YESTERDAY” – Stefano Maltese – Splasc(h), 1995
- “SOMBRA DEL SUR” – Stefano Maltese Orchestra – Splasc(h), 1993
- “THE TRUE STORY OF TWELVE COLOURS” – Antonio Moncada, Gioconda Cilio, Sebi Tramontana, Stefano Maltese – Splasc(h), 1993
- “AMOR FATI” – Stefano Maltese Quintet, guest Gioconda Cilio – Splasc(h),1989
- “HANGING IN THE SKY” – Stefano Maltese Open Music Orchestra – Splasc(h), 1988 (LP), 2004 (CD)
- “MUSIC FROM THE ISLAND” – Stefano Maltese Orchestra – Trademark, 1986
Others
- “SOUTHEAST OF MY DREAMS” – Alessandro Nobile Open Depot Quartet – Labirinti Sonori, 2014
- “LUMINARIA” – Marcello Inserra Quartet – Labirinti Sonori, 2006
- “IL POLISTRUMENTISMO NEL JAZZ” – AA. VV. – Musica Jazz, 2003
- “LA VOCE IN MOVIMENTO” – cd allegato al libro di Giovanni Fontana “Vocalità, scritture e strutture intermediali nella sperimentazione poetico-sonora”. (Edizioni Harta Performing & Momo), 2003
- “INUTILI DETTAGLI” Triandria – Triandria, 2003
- “ITALY” – Sergei Kuriokhin’s Pop Mechanics – Solyd Records, 2001
- “TROIS ÈCLATS DE TEMPS” – Antonio Moncada Quintet – Splasc(h), 2001
- “THE MOON AND THE CAT” – Capelletti, Coscia, Cilio Trio with Stefano Maltese & Davide Zaccaria – Mingus Live, 1998
- “IL COLORE DELLE RADICI” – Salvo Amore Ensemble – Splasc(h), 1997
- “SOUNDS OF MY SOUL” – Gioconda Cilio Quintet – DDQ, 1995
- “LIVE – FESTIVAL IBLEO DEL JAZZ” – Giuseppe Guarrella Projects – CMC, 1995
- “DEEP INSIDE” – Gioconda Cilio – Splasc(h),1988